Student Co-Authored Publications
Student co-authored publications
Over 125 Published Scientific Journal Articles with Evergreen Student Authors (in chronological, then alphabetical order) *denotes undergraduate author; ‡denotes graduate student author; §denotes high school teacher author (NSF RET Fellow or Murdock Trust Fellow); ‖denotes high school student author; ¶denotes incarcerated student author; Evergreen State College faculty are underlined.
In Press/ In Review:
1. Scheuerell*, R., and C.J. LeRoy. Plant Sex Influences on Riparian Systems. (In Revision).
2. LeRoy, C.J., S.M. Claeson, I.J. Garthwaite*, M.A. Thompson*, L.J. Thompson*, B. Kamakawiwo’ole*, A.M. Froedin-Morgensen*, V. McConathy*, J.M. Ramstack Hobbs, R. Stancheva, C.M. Albano, and D.S. Finn. Early successional stream function influenced by canopy cover development, but in-stream assemblages more influenced by hydrology. Aquatic Sciences (In Review).
3. Rex, I., Fischer, D.G., and R. Bartlett. 2023. A decade of understory community dynamics and stability in a mature second-growth forest in western Washington. Northwest Science (In Press)
2023
1. Fischer, D.G., Vieira, S.T. and A.D. Jayakaran, 2023. Distinct rainfall interception profiles among four common Pacific Northwest tree species. Forests, 14(1), p.144. https://www.mdpi.com/article/10.3390/f14010144
2. Minsavage-Davis, C.D., I.J. Garthwaite, M.D. Fisher, A. Leigh, J.M. Ramstack Hobbs, S.M. Claeson, G.M. Wimp, and C.J. LeRoy. 2023. Spatial habitat structure assembles willow-dependent communities across the primary successional watersheds of Mount St. Helens, USA. Forests, 14, 322. (DOI: https://doi.org/10.3390/f14020322).
2022
1. Allen, J.L., L.M. Calabria, H.E. Braid, E. Peterson, J. Villella, S. Sheehy, K. Glew, J.M. Graves*, A. Berim, R.D. Bull, C.T. Lymbery, and R.T. McMullin. 2022. Umbilicaria phaea var. coccinea: Conservation status, variety rank, and secondary chemistry. The Bryologist, 124(3): 389-407. (DOI: https://doi.org/10.1639/0007-2745-125.3.387).
2. Kamakawiwo’ole*, B.K., G.D. Weppler*, and C.J. LeRoy. 2022. Specimen records of benthic macroinvertebrate samples collected by Norman H. Anderson in the vicinity of Mount St. Helens, 1980-1990. Catalog of the Oregon State Arthropod Collection (OSAC), 6(2): 1-6. (DOI: http://dx.doi.org/10.5399/osu/cat_osac.6.2.4962.)
3. Ramstack Hobbs, J.M., I.J. Garthwaite*, L. Lancaster*, J. Moffett*, K. Johnson*, N. Criss*, V. McConathy*, C.A. James, A. Gipe, S.M. Claeson, and C.J. LeRoy. The influence of weevil herbivory on leaf litter chemistry in dioecious willows. Ecology & Evolution, 12:e9626 (DOI: https://doi.org/10.1002/ece3.9626).
4. Styring, A.R., J. Unggang, R. Ragai, K. Kueffner‡, D. Froehlich, N. Megom, L. Joseph, A. Jukie, M. Tarang, M. Nazrin, K. Sulok, K. Sekina, L.D. Setia, L. Giannone*, B.N. Aron, N. Swartz*, P. Hyde*, B. Tyler*, and D. James. 2022. Determining high conservation values in production landscapes: Biodiversity and assessment approaches. Frontiers in Environmental Science, 06 July 2022. (DOI: https://doi.org/10.3389/fenvs.2022.783794).
2021
1. Blair‡, S.I., C.H. Barlow, and J.K. McIntyre. 2021. Acute cerebrovascular effects in juvenile coho salmon exposed to roadway runoff. Canadian Journal of Fisheries and Aquatic Sciences, 78(2): 103-109. (DOI: https://doi.org/10.1139/cjfas-2020-0240).
2. Claeson, S.M., C.J. LeRoy, D.S. Finn, R.H. Stancheva, and E.R. Wolfe*. 2021. Variation in riparian and stream assemblages across the primary succession landscape of Mount St. Helens, U.S.A. Freshwater Biology, 66(5): 1002-1017. (DOI: https://doi.org/10.1111/fwb.13694).
3. Garthwaite*, I.J., A.M. Froedin-Morgensen*, S.H. Hartford*, S.M. Claeson, J.M. Ramstack Hobbs, and C.J. LeRoy. 2021. Summer flower pulses: Catkin litter processing in headwater streams. Fundamental and Applied Limnology, 195(3): 243-254. (DOI: https://doi.org/10.1127/fal/2021/1384).
4. Hadley, O., A. Cutler*, R. Schumaker*, and R. Bond. 2021. Wildfires vs. woodstoves: Wood smoke toxicity and chemical characterization study. Atmospheric Environment, 253: 118347. (DOI: https://doi.org/10.1016/j.atmosenv.2021.118347).
5. Hintz*, L., D.G. Fischer, N. Ferrari, and C.M. Crisafulli. 2021. Vegetation dynamics under residual large trees following a volcanic eruption in a Valdivian temperate rainforest. Plant Ecology, 222, 915-931. (DOI: https://doi.org/10.1007/s11258-021-01151-3).
6. Van Cise, A.M., R.W. Baird, A.E. Harnish‡, J.J. Currie, S.H. Stack, T. Cullins, and A.M. Gorgone. 2021. Mark-recapture estimates suggest declines in abundance of common bottlenose dolphin stocks in the main Hawaiian Islands. Endangered Species Research, 45:37-53. (DOI: https://doi.org/10.3354/esr01117).
2020
1. Blair‡, S., C.H. Barlow, E. Martin, R. Schumaker, and J. McIntyre. 2020. Methemoglobin determination by multi-component analysis in coho salmon (Oncorhynchus kisutch) possessing unstable hemoglobin. MethodsX, 7: 100836. (DOI: https://doi.org/10.1016/j.mex.2020.100836).
2. Calabria, L.M., K.S. Petersen*, A. Bidwell, and S.T. Hamman. 2020. Moss-cyanobacteria associations as a novel source of biological N2-fixation in temperate grasslands. Plant and Soil, 456: 307–321. (DOI: https://doi.org/10.1007/s11104-020-04695-x).
3. Hashida, Y., J.C. Withey, D.J. Lewis, T. Newman‡, and J.D. Kline. 2020. Anticipating changes in wildlife habitat induced by private forest owners' adaptation to climate change and carbon policy. PLoS One 15(4): e0230525. (DOI: https://doi.org/10.1371/journal.pone.0230525).
4. Leonardi*, N.D., E.V. Thuesen & S.H.D. Haddock. 2020. A sticky thicket of glue cells: a comparative morphometric analysis of colloblasts in twenty species of comb jelly (phylum Ctenophora). Ciencias Marinas, 46: 211-225. (DOI: https://doi.org/10.7773/cm.v46i4.3118).
5. LeRoy, C.J., J.M. Ramstack Hobbs, S.M. Claeson, J. Moffett*, I. Garthwaite*, N. Criss*, and L. Walker. 2020. Plant sex influences aquatic- terrestrial interactions. Ecosphere, 11(1):e02994. (DOI: https://doi.org/10.1002/ecs2.2994).
6. Waxwing*, S.R., D.G. Fischer, J.A. Antos, A. Biswas, and D.B. Zobel. 2020. Long-term responses of forest-floor bryophytes buried by tephra in the 1980 eruption of Mount St. Helens. Botany, 99(3): 151-165. (DOI: https://doi.org/10.1139/cjb-2020-0127).
2019
1. Harnish‡, A.E., J. Ault, C. Babbitt, F.M.D. Gulland, P.C. Johnson, N.L. Shaughnessy, K.A. Wood and R.W. Baird. 2019. 2019. Survival of a common bottlenose dolphin (Tursiops truncatus) calf with a presumptive gunshot wound to the head. Aquatic Mammals, 45(5): 543-548. (DOI: https://doi.org/10.1578/AM.45.5.2019.543).
2. Wolfe*, E.R., B.S. Younginger, and C.J. LeRoy. 2019. Fungal endophyte-infected leaf litter alters in-stream microbial communities and negatively influences aquatic fungal sporulation. Oikos, 128(3): 405-415. (DOI: https://doi.org/10.1111/oik.05619).
2018
1. Villella, J., T. Carlberg, D. Stone, J.E.D. Miller, N. Nelson*, and L.M. Calabria. 2018. Diversity and floristic patterns of epiphytic macrolichens on white oak in the Cascade-Siskiyou region of Oregon. Opuscula Philolichenum, 17: 299-318. (http://sweetgum.nybg.org/images3/2913/525/op17p6_1June_2018.pdf).
2. Watt*, A.J., D.G. Fischer, J.A. Antos, and D.B. Zobel. 2018. Leaf-level physiology in four subalpine plants in tephra-impacted forests during drought. Canadian Journal of Forest Research, 48: 431-441. (DOI: https://doi.org/10.1139/cjfr-2017-0361).
2017
1. Petersen*, K., L.M. Calabria, J.E.D. Miller, J. Brown-Clay*, L. Hynson*, T. Steen, K. Johnston, A. Ulbrich, E. Chandler, M. Miller, and J. Villella. 2017. Substrate age influences species richness and community composition of calicioid lichens and fungi on wooden buildings. The Bryologist, 120(1): 19-24. (DOI: https://doi.org/10.1639/0007-2745-120.1.019).
2. Winnikoff, J.R., T.M. Wilson‡, E.V. Thuesen, and S.H.D. Haddock. 2017. Enzymes feel the squeeze: biochemical adaptation to pressure in the deep sea. The Biochemist, 39: 26-29. (DOI: https://doi.org/10.1042/BIO03906026).
2016
1. Bopegedera, A.M.R.P., C.L. Coughenour, and A.J. Oswalt*. 2016. Quantitative determination of iron in limonite using spectroscopic methods with senior and general chemistry students: Geology-inspired chemistry lab explorations. Journal of Chemical Education, 93(11): 1916-1922. (DOI: DOI: https://doi.org/10.1021/acs.jchemed.5b00776).
2. Bryan*, D., A. El-Shibiny, Z. Hobbs*, J. Porter*, and E.M. Kutter. 2016. Bacteriophage T4 infection of stationary phase E. coli: Life after log from a phage perspective. Frontiers in Microbiology, 7: 1391. (DOI: https://doi.org/10.3389/fmicb.2016.01391).
3. Buckingham‡, D.A., M. Linders, C. Landa¶, L. Mullen¶, and C.J. LeRoy. 2016. Oviposition preference of endangered Taylor’s checkerspot butterflies (Euphydryas editha taylori) using native and non-native hosts. Northwest Science, 90(4):491-497. (DOI: http://dx.doi.org/10.3955/046.090.0409).
4. Calabria, L.M., K. Petersen*, S.T. Hamman, and R.J. Smith. 2016. Prescribed fire decreases lichen and bryophyte biomass and alters functional group composition in Pacific Northwest prairies. Northwest Science, 90(4): 470-483. (DOI: https://doi.org/10.3955/046.090.0407).
5. Fischer, D.G., J.A. Antos, W.G. Grandy*, and D.B. Zobel. 2016. A little disturbance goes a long way: 33-year understory successional responses to a thin tephra deposit. Forest Ecology and Management, 382: 236-243. (DOI: https://doi.org/10.1016/j.foreco.2016.10.018).
6. LeRoy, C.J., D.G. Fischer, W.M. Andrews*, L. Belleveau*, C.H. Barlow, J.A. Schweitzer, J.K. Bailey, J.C. Marks, and J.C. Kallestad. 2016. Salmon carcasses influence genetic linkages between forests and streams. Canadian Journal of Fisheries and Aquatic Sciences, 73:910-920. (DOI: https://doi.org/10.1139/cjfas-2015-0439).
7. Porter*, J., J. Anderson*, L. Carter*, E. Donjacour*, and M. Paros. 2016. In vitro evaluation of a novel bacteriophage cocktail as a preventative for bovine coliform mastitis. Journal of Dairy Science, 99(3): 2053-2062. (DOI: https://doi.org/10.3168/jds.2015-9748).
2015
1. Belleveau‡, L.J., J.Y. Takekawa, I. Woo, K.L. Turner, J.B. Barham, J.E. Takekawa, C.S. Ellings, and G. Chin-Leo. 2015. Vegetation community response to tidal marsh restoration of a large river estuary. Northwest Science, 89(2): 136-147 (DOI: https://doi.org/10.3955/046.089.0205)
2. Brousil*, M., C. Humann*, and D.G. Fischer. 2015. Plant-pollinator interactions in a northwest arum related to plant traits but not riparian forest management. Northwest Science, 89(3): 297-307. (DOI: https://doi.org/10.3955/046.089.0310).
3. Calabria, L.M., A. Arnold*, E. Charatz*, G. Eide, L.M. Hynson*, G. Jackmond*, J. Nannes*, D. Stone, and John Villella. 2015. A checklist of soil-dwelling bryophytes and lichens of the south Puget Sound prairies of western Washington," Evansia, 32(1): 30-41. (DOI: https://doi.org/10.1639/079.032.0106).
4. Husby‡, J.F., C.J. LeRoy and C. Fimbel. 2015. Pollinators may not limit native seed set at Puget Lowland prairie restoration nurseries. Journal of Pollination Ecology, 15(5): 30-37. https://www.pollinationecology.org/index.php/jpe/article/view/312/109
5. Weber‡, S., M. Hayes, T. Webb‡, and C.J. LeRoy. 2015. Environmental education in prison: A comparison of teaching methods and their influence on inmate attitudes and knowledge of environmental topics. Interdisciplinary Environmental Review, 16(2/3/4): 267-284. (DOI: https://doi.org/10.1504/IER.2015.071026).
2013
1. Aubrey*, D.A., N.M. Nadkarni, and C.P. Broderick*. 2013. Patterns of moisture and temperature in canopy and terrestrial soils in a temperate rainforest, Washington. Botany, (formerly Canadian Journal of Botany) 91: 739-744. (DOI: https://doi.org/10.1139/cjb-2013-0153).
2. Calabria, L. M., T. Cowles*, P. Cracknell*, A. Dominguez*, C. Leibman*, G. Eide*, N. Moore*, I. Matsuoka*, and M. Wirwahn*. 2013. Curation and databasing of the Evergreen Herbarium bryophyte collection. Douglasia, Spring Issue. (https://www.wnps.org/douglasia).
3. Hill*, K.C., and D.G. Fischer. 2013. Native-exotic species richness relationships across spatial scales in a prairie restoration matrix. Restoration Ecology, 22: 204-213. (DOI: https://doi.org/10.1111/rec.12067).
4. Logan*, C.J., and J.T. Longino. 2013. Adult male coatis play with a band of juveniles. Brazilian Journal of Biology, 73:353-355. (DOI: https://doi.org/10.1590/S1519-69842013000200015).
5. McAvity, D.M., T. Bristow*, E. Bunker*, A. Dreyer*. 2013. Perception without self-matching in conditional tag based cooperation. Journal of Theoretical Biology, 333: 58-67. (DOI: https://doi.org/10.1016/j.jtbi.2013.04.027).
6. Villella, J., D. Stone, L.M. Calabria, and G.D. Eide*. 2013. Macrolichen communities of Quercus garryana in the Puget Trough and Columbia River Gorge areas of Washington State. North American Fungi, 8(17): 1-22. (DOI: http://dx.doi.org/10.2509/naf2013.008.017).
2012
1. Kaviar* S., J. Shockey*, and P. Sundberg*. 2012. Observations on the Endemic Pygmy Three-Toed Sloth, Bradypus pygmaeus of Isla Escudo de Veraguas, Panamá. PLoS ONE, 7(11): e49854. (DOI: https://doi.org/10.1371/journal.pone.0049854).
2. Kirsch*, J.L., D.G. Fischer, A.N. Kazakova*, A. Biswas, R.E. Kelm*, D.W. Carlson*, and C.J. LeRoy. 2012. Diversity-carbon flux relationships in a Northwest forest. Diversity, 4: 33-58. (DOI: https://doi.org/10.3390/d4010033).
3. Towanda, T.‡, and E.V. Thuesen. 2012. Prolonged exposure to elevated CO2 promotes growth of the algal symbiont Symbiodinium muscatinei in the intertidal sea anemone Anthopleura elegantissima. Biology Open, 1: 615-621. (DOI: https://doi.org/10.1242/bio.2012521).
2011
1. Abedon, S.T., S.J. Kuhl, B.G. Blasdel*, and E.M. Kutter. 2011. Phage treatment of human infections. Bacteriophage, 1: 66-85. (DOI: https://doi.org/10.4161/bact.1.2.15845).
2. Bretherton*, W.D., J.S. Kominoski, D.G. Fischer, and C.J. LeRoy. 2011. Salmon carcasses alter leaf litter species diversity effects on in-stream decomposition. Canadian Journal of Fisheries and Aquatic Sciences, 68: 1495-1506 (DOI: https://doi.org/10.1139/f2011-082).
3. Brown, R.A.‡, and E.V. Thuesen. 2011. Biodiversity of mobile benthic fauna in geoduck (Panopea generosa) aquaculture beds in southern Puget Sound, Washington. Journal of Shellfish Research, 30: 771-776. (DOI: https://doi.org/10.2983/035.030.0317).
4. Elliott*, C., D.G. Fischer, and C.J. LeRoy. 2011. Germination of three native Lupinus species in response to temperature. Northwest Science, 85: 403-410 (DOI: https://doi.org/10.3955/046.085.0223).
5. Kutter, E.M., K. Skutt-Kakaria*, B. Blasdel*, A. El-Shibiny, A. Castano*, D. Bryan*, A.M. Kropinski, A. Villegas, H.-W. Ackermann, A.L. Toribio, D. Pickard, H. Anany, T. Callaway, and A.D. Brabban. 2011. Characterization of a ViI-like phage specific to Escherichia coli O157:H7. Virology Journal, 8: 430. (DOI: https://doi.org/10.1186/1743-422X-8-430).
6. LeRoy, C.J., D.G. Fischer, K. Halstead*, M. Pryor*, J.K. Bailey, and J.A. Schweitzer. 2011. A fungal endophyte slows litter decomposition in streams. Freshwater Biology, 56: 1426-1433 (DOI: https://doi.org/10.1111/j.1365-2427.2011.02581.x).
7. Raya, R.R., R.A. Oot*, B. Moore-Maley*, S. Wieland*, T.R. Callaway, E.M. Kutter, and A.D. Brabban. 2011. Naturally resident and exogenously applied T4-like and T5-like bacteriophages can reduce Escherichia coli O157 H7 levels in sheep guts. Bacteriophage, 1: 15-24. (DOI: https://doi.org/10.4161/bact.1.1.14175).
8. Rook*, E.J., D.G. Fischer, J.L. Kirsch*, R.D. Seyferth*, C.J. LeRoy, and S. Hamman. 2011. Responses of prairie vegetation to fire, herbicide, and invasive species legacy. Northwest Science, 85: 288-302 (DOI: https://doi.org/10.3955/046.085.0216).
9. Wiley*, T.E., D.A. Rorvik, and C.H. Barlow. 2011. A method to measure subdermal oxygen tension and transcutaneous hemoglobin saturation in skin grafts. The FASEB Journal, 25: 725.3-725.3. (DOI: https://doi.org/10.1096/fasebj.25.1_supplement.725.3)
2010
1. Ceyssen, P.-J., A.B. Brabban, L. Rogge*, M. Spooner Lewis*, D. Pickard, D. Goulding, G. Dougan, J.-P. Noben, A. Kropinski, E.M. Kutter, and R. Lavigne. 2010. Molecular and physiological analysis of three Pseudomonas aeruginosa phages belonging to the “N4-like viruses.” Virology, 405(10): 26-30. (DOI: https://doi.org/10.1016/j.virol.2010.06.011).
2. McNett*, K., J. Longino, P. Barriga, O. Vargas, K. Phillips, and C.L. Sagers. 2010. Stable isotope investigation of a cryptic ant-plant association: Myrmelachista flavocotea (Hymenoptera, Formicidae) and Ocotea spp. (Lauraceae). Insectes Soc., 57: 67-72. (DOI: https://doi.org/10.1007/s00040-009-0051-z).
3. Thuesen, E.V., F.E. Goetz*, and S.H.D. Haddock. 2010. Bioluminescent organs of two deep-sea arrow worms, Eukrohnia fowleri and Caecosagitta macrocephala, with further observations on bioluminescence in chaetognaths. Biological Bulletin, 219: 100-111. (DOI: https://doi.org/10.1086/BBLv219n2p100).
2009
1. Longino, J.T., and D.J. Cox*. 2009. Pheidole bilimeki reconsidered (Hymenoptera: Formicidae). Zootaxa, 1985: 34–42. (DOI: https://doi.org/10.11646/ZOOTAXA.1985.1.3).
2. Muehlbauer, J.D., C.J. LeRoy, J.M. Lovett, K.K. Flaccus§, J.K. Vlieg§, and J.C. Marks. 2009. Short-term responses of decomposers to flow restoration in Fossil Creek, Arizona, USA. Hydrobiologia, 618: 35-45. (DOI: https://doi.org/10.1007/s10750-008-9545-3).
3. Ulrich¶, C., and N.M. Nadkarni. 2009. Sustainability research in enforced residential institutions: collaborations of ecologists and prisoners. Environment, Development, and Sustainability, 11: 815-825. (DOI: https://doi.org/10.1007/s10668-008-9145-4).
2007
1. Oot*, R.A., R.R. Raya, T.R. Callaway, T.S. Edrington, E.M. Kutter, and A.D. Brabban. 2007. Prevalence of Escherichia coli O157 and O157:H7-infecting bacteriophages in feedlot cattle feces. Letter in Applied Microbiology, 45(4): 445-453. (DOI: https://doi.org/10.1111/j.1472-765X.2007.02211.x).
2006
1. Raya, R.R., P. Varey*, R.A. Oot*, M.R. Dyen*, T.R. Callaway, T.S. Edrington, E.M. Kutter, and A.D. Brabban. 2006. Isolation and characterization of a new T-even bacteriophage, CEV1, and determination of its potential to reduce Escherichia coli O157:H7 levels in sheep. Applied and Environmental Microbiology, 72(9): 6405-6410. (DOI: https://doi.org/10.1128/aem.03011-05).
2. Riddle, A., N.L. Luo, M. Manese, D.J. Beardsley, L. Green*, D.A. Rorvik*, K.A. Kelly*, C.H. Barlow, J.J. Kelly, A.R. Hohimer, and S.A. Back. 2006. Spatial heterogeneity in oligodendrocyte lineage maturation and not cerebral blood flow predicts fetal ovine periventricular white matter injury. Journal of Neuroscience, 26(11): 3045-3055. (DOI: https://doi.org/10.1523/JNEUROSCI.5200-05.2006).
3. Towanda, T.*, and E.V. Thuesen. 2006. Ectosymbiotic behavior of Cancer gracilis and its trophic relationships with its host Phacellophora camtschatica and the parasitoid Hyperia medusarum. Marine Ecology Progress Series, 315: 221-236. (DOI: https://doi.org/10.3354/meps315221).
2005
1. Brabban A.D., E. Hite*, and T.R. Callaway TR. 2005. Evolution of foodborne pathogens via temperate bacteriophage-mediated gene transfer. Foodborne Pathogens and Disease, 2(4): 287-303. (DOI: https://doi.org/10.1089/fpd.2005.2.287).
2. Missildine‡, B.R., R.J. Peters, G. Chin-Leo, and D. Houck. 2005. Polychlorinated biphenyl concentrations in adult Chinook salmon (Oncorhynchus tshawytscha) returning to coastal and Puget Sound hatcheries of Washington State. Environmental Science and Technology, 39(18): 6944-6951. (DOI: https://doi.org/10.1021/es0506408)
3. Rutherford, L.D.‡, and E.V. Thuesen. 2005. Metabolic performance and survival of medusae in estuarine hypoxia. Marine Ecology Progress Series, 294: 189-200. (https://www.int-res.com/articles/meps2005/294/m294p189.pdf).
4. Thuesen, E.V., K.D. McCullough*, and J.J. Childress. 2005. Metabolic enzyme activities in swimming muscle of medusae: Is the scaling of glycolytic activity related to oxygen availability? Journal of the Marine Biological Association of the United Kingdom, 85: 603-611. (DOI: https://doi.org/10.1017/S0025315405011537).
5. Thuesen, E.V., L.D. Rutherford‡, and P.L. Brommer‡. 2005. The role of aerobic metabolism and intragel oxygen in hypoxia tolerance of three ctenophores: Pleurobrachia bachei, Bolinopsis infundibulum and Mnemiopsis leidyi. Journal of the Marine Biological Association of the United Kingdom, 85: 627-633. (DOI: https://doi.org/10.1017/S0025315405011550).
6. Thuesen, E.V., L.D. Rutherford‡, P.L. Brommer‡, K. Garrison§, M.A. Gutowska*, and T. Towanda*. 2005. Intragel oxygen promotes hypoxia tolerance of scyphomedusae. Journal of Experimental Biology, 208: 2475-2482. (DOI: https://doi.org/10.1242/jeb.01655).
2004
1. Brabban, A., D. Nelsen*, E.M. Kutter, T. Edrington, and T. Callaway. 2004. Approaches to controlling Escherichia coli 0157:H7, a foodborne pathogen and an emerging environmental hazard. Environmental Practice, 6(3):208-229. (DOI: https://doi.org/10.1017/S1466046604000365).
2. Flaccus§, K., J. Vlieg§, J.C. Marks and C.J. LeRoy. 2004. Restoring Fossil Creek. The Science Teacher, 71(6): 36-40. (DOI: https://www.proquest.com/openview/aad3b624315d4b0a593d9729807f8eea/1?pq-origsite=gscholar&cbl=40590).
3. Gutowska, M.A.*, J.C. Drazen, and B.H. Robison. 2004. Digestive chitinolytic activity in marine fishes of Monterey Bay, California. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 139: 351-358. (DOI: https://doi.org/10.1016/j.cbpb.2004.09.020).
4. Nadkarni, N.M., and M. Sumera*. 2004. Old-growth forest canopy structure and its relationship to throughfall interception. Forest Science, 50: 290-298. (DOI: https://doi.org/10.1093/forestscience/50.3.290).
5. Ross, P.S., S. Jeffries, M.B. Yunker, R.F. Addison, M.G. Ikonomou and J. Calambokidis*. 2004. Harbour seals (Phoca vitulina) in British Columbia, Canada, and Washington State, USA, reveal a combination of local and global polychlorinated biphenyl, dioxin, and furan signals. Environmental Toxicology and Chemistry. 23(1):157-165. (DOI: https://doi.org/10.1897/03-85).
6. Schonberg‡, L.A., J.T. Longino, N.M. Nadkarni, S.P. Yanoviak, and J.C. Gering. 2004. Arboreal ant species richness in primary forest, secondary forest, and pasture habitats of a tropical montane landscape. Biotropica, 36: 402-409. (DOI: https://doi.org/10.1111/j.1744-7429.2004.tb00333.x).
7. Yanoviak, S.P., H.A. Walker*, and N.M. Nadkarni. 2004. Arthropod assemblages in vegetative vs. humic portions of epiphyte mats in a neotropical cloud forest. Pedobiologia, 48: 51-58. (DOI: https://doi.org/10.1016/j.pedobi.2003.07.003).
2003
1. Batra, A., R.C. Hedden, P. Schofield, A. Barnes*, C. Cohen, and T. M. Duncan. 2003. Conformational behavior of guest chains in uniaxially stretched poly (diethylsiloxane) elastomers: 2H NMR and SANS. Macromolecules, 36: 9458-9466. (DOI: https://doi.org/10.1021/ma035143v).
2. Edrington, T.S., T.R. Callaway, P.D. Varey*, Y.S. Jung, K.M. Bischoff, R.O. Elder, R.C. Anderson, E. Kutter, A.D. Brabban, D.J. Nisbet. 2003. Effects of the antibiotic ionophores monensin, lasalocid, laidlomycin propionate and bambermycin on Salmonella and E. coli O157:H7 in vitro. Journal of Applied Microbiology, 94(2): 207-213. (DOI: https://doi.org/10.1046/j.1365-2672.2003.01822.x).
3. Jeffries, S., H. Huber, J. Calambokidis* and J. Laake. 2003. Trends and status of harbor seals in Washington State: 1978-1999. Journal of Wildlife Management 67(1):201-219. (DOI: https://doi.org/10.2307/3803076).
4. Merwin*, M., S. Rentmeester*, and N.M. Nadkarni. 2003. The influence of host tree species on the distribution of epiphytic bromeliads in experimental monospecific plantations, La Selva, Costa Rica. Biotropica, 35: 37-47. (DOI: https://doi.org/10.1111/j.1744-7429.2003.tb00260.x).
2001
1. Cobb*, A.R., N.M. Nadkarni, G.A. Ramsey*, and A.J. Svoboda*. 2001. Recolonization of Bigleaf Maple branches by epiphytic bryophytes following experimental disturbance. Canadian Journal of Botany, 79: 1-8. (DOI: https://doi.org/10.1139/b00-134).
2. Kennedy*, P.G., and T. Quinn. 2001. Understory plant establishment on old-growth stumps and the forest floor in western Washington. Forest Ecology and Management, 154(1-2): 193-200. (DOI: https://doi.org/10.1016/S0378-1127(00)00622-8).
3. Merwin*, M., S.R. Gradstein, and N.M. Nadkarni. 2001. Epiphytic bryophytes of Monteverde, Costa Rica. Tropical Bryology, 20:63-70. (DOI: https://doi.org/10.11646/bde.20.1.10).
4. Merwin*, M.C. and N.M. Nadkarni. 2001. 100 years of tropical bryophyte and lichen ecology: a bibliographic guide to the literature from 1901–2000. Tropical Bryology, 21: 97-118. (DOI: https://doi.org/10.11646/bde.21.1.11).
5. McKeon*, C.S. and T.A.D. Baggallay. 2001. Atelopus tricolor (Three-colored Stubfoot Toad) nocturnal calling. 2001. Herpetological Reviews, 32: 247
2000
1. Lyons*, B., N.M. Nadkarni, and M.P. North. 2000. Spatial distribution and succession of epiphytes on Tsuga heterophylla (western hemlock) in an old-growth Douglas-fir forest. Canadian Journal of Botany, 78: 957-68. (DOI: https://doi.org/10.1139/b00-064).
2. Nadkarni, N.M., A.R. Cobb*, and R. Solano. 2000. Interception and retention of macroscopic bryophyte fragments by branch substrates in a tropical cloud forest: an experimental and demographic approach. Oecologia, 122: 60-65. (DOI: https://doi.org/10.1007/PL00008836).
1998
1. Paddison*, P., S.T. Abedon, H.K. Dressman, K. Gailbreath*, J. Tracy*, E. Mosser*, J. Neitzel, B. Guttman, and E. Kutter. 1998. The roles of the bacteriophage T4 r genes in lysis inhibition and fine-structure genetics: A new perspective. Genetics, 148(4): 1539–1550. (DOI: https://doi.org/10.1093/genetics/148.4.1539).
1996
1. Buchanan*, J.B., L.A. Brennan*, C.T. Schick*, and S.G. Herman. 1996. Body mass and lipid levels of shorebirds collected in western Washington. Northwestern Naturalist, 77(2): 51-54. (DOI: https://doi.org/10.2307/3536622).
2. Nadkarni, N.M., G.G. Parker, E.D. Ford, J.B. Cushing, and C. Stallman*. 1996. The International Canopy Network: a pathway for interdisciplinary exchange of scientific information on forest canopies. Northwest Science, 70: 104-08.
3. Reid*, M.E., and G. Craven*. 1996. Geologic sources of asbestos in Seattle’s Tolt Reservoir. Northwest Science, 70(1): 48-54. (http://hdl.handle.net/2376/1299).
1995
1. Kutter, E., K. Gachechiladze, A. Poglazov, E. Marusich, M. Shneider, P. Aronsson*, A. Napuli*, D. Porter*, and V. Mesyanzhinov. 1995. Evolution of T4-related phages. Virus Genes, 11: 285-297. (DOI: https://doi.org/10.1007/BF01728666).
2. Longino, J.T., and D.A. Hartley*. 1995. Perissomyrmex snyderi (Hymenoptera, Formicidae) is native to Central America and exhibits worker polymorphism. Psyche, 101: 195-202. (DOI: https://doi.org/10.1155/1994/15747).
1994
1. Kutter, E.M., K. d'Acci*, R.H. Drivdahl*, J. Gleckler*, J.C. McKinney*, S. Peterson*, and B.S. Guttman. 1994. Identification of bacteriophage T4 prereplicative proteins on two-dimensional polyacrylamide gels. Journal of Bacteriology, 176(6): 1647-1654. (DOI: https://doi.org/10.1128/jb.176.6.1647-1654.1994).
1993
1. Kashlev, M., E. Nudler, A. Goldfarb, T. White*, and E. Kutter. 1993. Bacteriophage T4 Alc protein: A transcription termination factor sensing local modification of DNA. Cell, 75(1): 147-154. (DOI: https://doi.org/10.1016/S0092-8674(05)80091-1).
1991
1. Brennan*, L.A., J.B. Buchanan*, C.T. Schick*, and S.G. Herman. 1991. On estimating sex ratios with discriminant function analysis: The influence of probability cutpoints and sample size. Journal of Field Ornithology, 62(3): 357-366. (https://www.jstor.org/stable/20065802).
2. Buchanan*, J.B., S.G. Herman, and J.B. Bulger. 1991. Observations of courtship and copulatory behavior of the Snowy Plover in the western Great Basin. Northwestern Naturalist, 72: 72-74. (DOI: https://doi.org/10.2307/3536804).
3. Buchanan*, J.B., C.T. Schick*, L.A. Brennan*, and S.G. Herman. 1991. Recovery of prey from water by the Merlin. Journal of Raptor Research, 25: 43-44.
1990
1. Brennan*, L.A., M.A. Finger*, J.B. Buchanan*, C.T. Schick*, and S.G. Herman. 1990. Stomach contents of dunlins collected in western Washington. Northwestern Naturalist, 71(3): 99-102. (DOI: https://doi.org/10.2307/3536782).
2. Drivdahl*, R.H., and E.M. Kutter. 1990. Inhibition of transcription of cytosine-containing DNA in vitro by the alc gene product of bacteriophage T4. Journal of Bacteriology, 172(5): 2716-2727. (DOI: https://doi.org/10.1128/jb.172.5.2716-2727.1990).
3. Larsen*, E.M., and S.A. Richardson*. 1990. Some effects of a major oil spill on wintering shorebirds at Grays Harbor, Washington. Northwestern Naturalist, 71(3): 88-92. (DOI: https://doi.org/10.2307/3536777).
1988
1. Buchanan*, J.B., C.T. Schick*, L.A. Brennan*, and S.G. Herman. 1988. Merlin predation on wintering dunlins: hunting success and dunlin escape tactics. The Wilson Bulletin, 100(1): 108-118. (https://www.jstor.org/stable/4162521).
2. Herman, S.G., J.B. Bulger, and J.B. Buchanan*. 1988. The Snowy Plover in southeastern Oregon and western Nevada. Journal of Field Ornithology, 59: 13-21. (https://www.jstor.org/stable/4513286).
1987
1. Schick*, C.T., L.A. Brennan*, J.B. Buchanan*, M.A. Finger*, T.M. Johnson*, and S.G. Herman. 1987. Organochlorine contamination in shorebirds from Washington State and the significance for their falcon predators. Environmental Monitoring and Assessment, 9(2): 115-131. (DOI: https://doi.org/10.1007/BF00394345).
1986
1. Buchanan*, J.B., L.A. Brennan*, C.T. Schick*, S.G. Herman, and T.M. Johnson*. 1986. Age and sex composition of wintering Dunlin populations in western Washington. Wader Study Group Bulletin, 46: 37-41.
2. Buchanan*, J.B., S.G. Herman, and T.M. Johnson*. 1986. Success rates of the Peregrine Falcon (Falco peregrinus) hunting Dunlin (Calidris alpina) during winter. Raptor Research, 20: 130-131.
3. Sullivan*, S.L., W.H. Pyle*, and S.G. Herman. 1986. Cassin’s Finch nesting in big sagebrush. The Condor, 88: 378-379. (https://sora.unm.edu/sites/default/files/journals/condor/v088n03/p0378-p0379.pdf).
1985
1. Brennan*, L.A., J.B. Buchanan*, S.G. Herman, and T.M. Johnson*. 1985. Interhabitat movements of wintering Dunlins in western Washington. Murrelet, 66: 11-16. (https://www.jstor.org/stable/3535459).
2. Buchanan*, J.B., L.A. Brennan*, C.T. Schick*, M.A. Finger*, T.M. Johnson*, and S.G. Herman. 1985. Dunlin weight changes in relation to food habits and available prey. Journal of Field Ornithology, 56(3): 265-272. (https://www.jstor.org/stable/4513025).
1984
1. Brennan*, L.A., J.B. Buchanan*, C.T. Schick*, S.G. Herman, and T.M. Johnson*. 1984. Sex determination of Dunlins in winter plumage. Journal of Field Ornithology, 55: 343-348. (https://www.jstor.org/stable/4512917).
2. Kutter, E.M., R. Drivdahl*, and K. Rand. 1984. Identification and characterization of the alc gene product of bacteriophage T4. Genetics, 108(2): 291-304. (DOI: https://doi.org/10.1093/genetics/108.2.291).
3. LaGory*, K.E., M.K. LaGory*, D.M. Meyers*, and S.G. Herman. 1984. Niche relationships in wintering mixed-species flocks in western Washington. Wilson Bulletin, 96(1): 108-116. (https://www.jstor.org/stable/4161877).
1983
1. Canning*, D.J., and S.G. Herman. 1983. Gadwall breeding range expansion into western Washington. The Murrelet, 64(1): 27-31. (DOI: https://doi.org/10.2307/3536021).
1982
1. Beug, M.W., and J. Bigwood*. 1982. Psilocybin and psilocin levels in 20 species from 7 genera of wild mushrooms in the Pacific Northwest, U.S.A. Journal of Ethnopharmacology, 5(3): 271-285. (DOI: DOI: https://doi.org/10.1016/0378-8741(82)90013-7).
2. Bigwood*, J., and M.W. Beug. 1982. Variation of psilocybin and psilocin levels with repeated flushes (harvests) of mature sporocarps of Psilocybe cubensis (Earle) Singer. Journal of Ethnopharmacology, 5(3): 287-291. (DOI: https://doi.org/10.1016/0378-8741(82)90014-9).
1981
1. Beug, M.W., and J. Bigwood*. 1981. Quantitative analysis of psilocybin and psilocin in Psilocybe baeocystis Singer and Smith by high performance liquid chromatography and thin layer chromatography, Journal of Chromatography, 207: 379-385. DOI: https://doi.org/10.1016/s0021-9673(00)88741-5).
2. Kjelmyr, J., D. DeSante, and J. Buchanan*. 1981. Thirty-third winter bird-population study 51. Disturbed coastal scrub, b. American Birds, 35:35.
3. Kutter, E.M., D. Bradley*, R. Schenck*, B.S. Guttman, and R. Laiken*. 1981. Bacteriophage T4 alc gene product: General inhibitor of transcription from cytosine-containing DNA. Journal of Virology, 40(3): 822-829. (DOI: https://doi.org/10.1128/JVI.40.3.822-829.1981).
1980
1. Calambokidis*, J. 1980. The biology of Washington State harbor seals. Cetus 2(3):4.
2. Stamets*, P.E., M.W. Beug, J.E. Bigwood*, and G. Guzman*. 1980. A new species and a new variety of psilocybe from North America. Mycotaxon, ii: 476-484.
1979
1. Calambokidis*, J., R.E. Everitt, J.C. Cubbage*, and S.D. Carter*. 1979. Harbor seal census for the inland waters of Washington, 1977‑1978. Murrelet 80: 110‑112. (https://www.jstor.org/stable/3534278).
2. Calambokidis*, J., J. Mowrer*, M.W. Beug, and S.G. Herman. 1979. Selective retention of polychlorinated biphenyl components in the mussel, Mytilus edulis. Archives of Environmental Contamination and Toxicology, 8(3): 299-308. (DOI: https://doi.org/10.1007/BF01056246).
3. Herman, S.G. and J.B. Bulger*. 1979. Effects of a forest application of DDT on nontarget organisms. Wildlife Monograph, 69: 3-62. (https://www.jstor.org/stable/3830572).
4. Ruck, C.A.P., J. Bigwood*, D. Staples, J. Ott*, and R.G. Wasson. 1979. Entheogens. Journal of Psychedelic Drugs, 11(1-2): 145-146. (DOI: https://doi.org/10.1080/02791072.1979.10472098).
1978
1. Morton*, D., E.M. Kutter, and B.S. Guttman. 1978. Synthesis of T4 DNA and bacteriophage in the absence of dCMP hydroxymethylase. Journal of Virology, 28(1): 262–269. (DOI: https://doi.org/10.1128/JVI.28.1.262-269.1978).
1977
1. Mowrer*, J., J. Calambokidis*, N. Musgrove, B. Drager*, M.W. Beug, and S.G. Herman. 1977. Polychlorinated biphenyls in cottids, mussels, and sediment in southern Puget Sound, Washington. Bulletin of Environmental Contamination and Toxicology, 18(5): 588-594. (DOI: https://doi.org/10.1007/BF01684005).
1975
1. Kutter, E., A. Beug*, R. Sluss, L. Jensen*, and D. Bradley*. 1975. The production of undegraded cytosine-containing DNA by bacteriophage T4 in the absence of dCTPase and endonucleases II and IV, and its effects on T4-directed protein synthesis. Journal of Molecular Biology, 99(4): 591-607. (DOI: https://doi.org/10.1016/s0022-2836(75)80174-4).
2. Page, G., and D. Whitacre*. 1975. Raptor predation on wintering shorebirds. The Condor, 77(1): 73-83. (DOI: https://doi.org/10.2307/1366760).
PUBLISHED GOVERNMENTAL REPORTS WITH EVERGREEN STUDENT AUTHORS
2016
1. Evenson, J.R., D. Anderson*, B.L. Murphie, T.A. Cyra, and J. Calambokidis. 2016. Disappearance and return of harbor porpoise to Puget Sound: 20 year pattern revealed from winter aerial surveys. Technical Report. Washington Department of Fish and Wildlife, Wildlife Program and Cascadia Research Collective, Olympia, WA. (https://wdfw.wa.gov/publications/01787)
1991
1. Calambokidis*, J., J.B. Buchanan*, G.H. Steiger, and J.R. Evenson*. 1991. Toxic contaminants in Puget Sound wildlife. Report EPA910/9‑91‑023 to the U.S. EPA, Region 10, Seattle, Washington. 96pp. (https://www.cascadiaresearch.org/publications/toxic-contaminants-puget-sound-wildlife)
2. Calambokidis*, J., and J. Barlow. 1991. Chlorinated hydrocarbon concentrations and their use for describing population discreetness in harbor porpoises from Washington, Oregon, and California. In (J.E. Reynolds III and D.K. Odell (eds.). Marine mammal strandings in the United States: proceedings of the Second Marine Mammal Stranding Workshop; 3‑5 December 1987, Miami, Florida. NOAA Technical Report NMFS 98:101‑110. (https://www.cascadiaresearch.org/publications/chlorinated-hydrocarbon-concentrations-and-their-use-describing-population-discreetness)
3. Calambokidis*, J., G.H. Steiger, L.J. Lowenstine, and D.S. Becker. 1991. Chemical contamination of harbor seal pups in Puget Sound. Report EPA 910/9‑91‑032 to U.S. EPA, Region 10, Seattle, Washington. (https://www.osti.gov/biblio/5910856-chemical-contamination-harbor-seal-pups-puget-sound-puget-sound-estuary-program)
4. Calambokidis*, J., G.H. Steiger, J.R. Evenson*, and S.J. Jeffries. 1991. Censuses and disturbance of harbor seals at Woodard Bay and recommendations for protection. Final report to the Washington Department of Natural Resources, Olympia. 44pp. (https://www.cascadiaresearch.org/publications/censuses-and-disturbance-harbor-seals-woodard-bay-and-recommendations-protection)
1984
1. Calambokidis*, J., J. Peard, G.H. Steiger*, J.C. Cubbage*, and R.L. DeLong. 1984. Chemical contaminants in marine mammals from Washington State. NOAA Technical Memorandum NOS OMS 6, National Technical Information Service, Springfield, Virginia. 167pp. (https://www.cascadiaresearch.org/publications/chemical-contaminants-marine-mammals-washington-state)
1978
1. Calambokidis*, J., K. Bowman*, S. Carter*, J. Cubbage*, P. Dawson*, T. Fleischner*, J. Shuett‑Hames*, J. Skidmore*, B. Taylor*, and S.G. Herman. 1978. Chlorinated hydrocarbon concentrations and the ecology and behavior of harbor seals in Washington State waters. Final report to the National Science Foundation, Washington, D.C. 121pp. (https://www.cascadiaresearch.org/files/publications/TESC-1978.pdf)
1975
1. Calambokidis*, J. et al. 1975. Distribution and biomagnification of polychlorinated biphenyls in the benthic community. Final report to the National Science Foundation, Washington, D.C. 41pp.
Published Books and Book Chapters with Evergreen Student Authors
2017
1. Trivett, J.R., R. Pinderhughes, K. Bush, L. Caughman‡, and C.J. LeRoy. 2017. Environmental Education in Prisons: Transforming People as we Transform the World. In: WorldWatch Institute. State of the World: EarthED: Rethinking Education on a Changing Planet. Island Press, Washington D.C. (ISBN: 9781610918428) https://islandpress.org/books/earthed-state-world.
2016
1. Trivett, J.R., K. Bush, C. Elliott, J. Mann‡, R. Pond, E. Tharp, J. Vanneste, D.J. Pacholke, and C.J. LeRoy. 2016. A Case Study: Sustainability in Prisons Project (SPP) Horticulture Programs. Pp. 365-383, In: Sowing Seeds in the City: Human Dimensions. Springer, Netherlands. (ISBN: 978-94-017-7454-3). http://link.springer.com/chapter/10.1007/978-94-017-7456-7_30.
2013
1. Kutter E.M., Gvasalia G., Alavidze Z., and E. Brewster*. 2013. Phage therapy. In: M. Grassberger, R. Sherman, O. Gileva, C. Kim, and K. Mumcuoglu (eds). Biotherapy - History, Principles and Practice. Springer, Dordrecht. (DOI: https://doi.org/10.1007/978-94-007-6585-6_8).
2012
1. LeRoy, C.J., K. Bush, J. Trivett, and B. Gallagher‡. 2012. The Sustainability in Prisons Project: An Overview 2004-2012. Gorham Publishing, Olympia, WA. (ISBN: 978-0988641501). http://sustainabilityinprisons.org/wp-content/uploads/2016/02/Overview-cover-text-reduced-size.pdf
2001
1. Nadkarni, N.M., M.C. Merwin*, and J. Nieder. 2001. Forest canopies: plant diversity. In Encyclopedia of Biodiversity, edited by S. Levin, 27-40. Academic Press, San Diego, California, U.S.A. https://www.sciencedirect.com/referencework/9780122268656/encyclopedia-of-biodiversity
1983
1. Stamets*, P., and J.S. Chilton. 1983. The mushroom cultivator: A practical guide to growing mushrooms at home. Agarikon Press, Olympia, WA. https://atomicbooks.com/collections/vendors?q=Agarikon%20Press
1978
1. Ott*, J., and J. Bigwood*. 1978. Teonanacatl, hallucinogenic mushrooms of North America. Madrona Publishers.
2. Stamets*, P. 1978. Psilocybe Mushrooms and their Allies, Homestead Book Company, Seattle, WA.
1977
1. Ott*, J. 1977. Hallucinogenic Plants of North America, Wingbow Press.
Published Conference Proceedings with Evergreen Student Authors
2015
1. Kerr*, J., S. Brown*, B. Grant*, A. Biswas, and C. Dirks. 2015. Preliminary Survey of Tardigrades along Elevation and Moisture Gradients in Grand Canyon Park, USA. XIII International Symposium on Tardigrada. (http://www.tardigrada.net/newsletter/symposia_13.htm)
2008
1. Ellings‡, C.S., C.J. Cederholm, and G. Chin-Leo. 2008. The influence of spawning Pacific salmon on the stable isotope composition, feeding behavior, and caloric intake of coastal cutthroat trout. Coastal Cutthroat Trout Symposium: Status, Management, Biology, and Conservation. Oregon Chapter, American Fisheries Society. (https://www.fws.gov/columbiariver/cctsym/ppt/ppt7.pdf)
1997
1. Cushing, J.B., J. Laird*, E. Pasalic*, E. Kutter, T. Hunkapiller, F. Zucker, and D. Yee. 1997. Beyond interoperability-tracking and managing the results of computational applications. Proceedings. Ninth International Conference on Scientific and Statistical Database Management pp. 223-236, (DOI: https://doi.org/10.1109/SSDM.1997.621191).